Detailed information of SNP:
|
SNP ID:
sf1220412732(Gbrowse)
Chromosome: chr12 Position: 20412732 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1288 | 90.84% | 9.16% |
| All Indica | 737 | 97.42% | 2.58% |
| All Japonica | 438 | 79.91% | 20.09% |
| Aus | 62 | 93.55% | 6.45% |
| Indica I | 336 | 98.81% | 1.19% |
| Indica II | 203 | 94.58% | 5.42% |
| Indica Intermediate | 198 | 97.98% | 2.02% |
| Temperate Japonica | 317 | 78.23% | 21.77% |
| Tropical Japonica | 62 | 93.55% | 6.45% |
| Japonica Intermediate | 59 | 74.58% | 25.42% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220412732 | T->C | LOC_Os12g33910(LOC_Os12g33910.1) | Non-Synonymous SNP |