Detailed information of SNP:
|
SNP ID:
sf1220489895(Gbrowse)
Chromosome: chr12 Position: 20489895 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 57.93% | 42.07% |
| All Indica | 779 | 89.73% | 10.27% |
| All Japonica | 492 | 4.88% | 95.12% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 365 | 92.05% | 7.95% |
| Indica II | 208 | 85.58% | 14.42% |
| Indica Intermediate | 206 | 89.81% | 10.19% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 90 | 15.56% | 84.44% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220489895 | T->G | INTERGENIC | None |