Detailed information of SNP:
|
SNP ID:
sf1220500602(Gbrowse)
Chromosome: chr12 Position: 20500602 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 59.65% | 40.35% |
| All Indica | 780 | 88.72% | 11.28% |
| All Japonica | 487 | 9.03% | 90.97% |
| Aus | 63 | 87.30% | 12.70% |
| Indica I | 368 | 91.03% | 8.97% |
| Indica II | 206 | 84.95% | 15.05% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 333 | 2.40% | 97.60% |
| Tropical Japonica | 87 | 33.33% | 66.67% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220500602 | A->G | INTERGENIC | None |