Detailed information of SNP:
|
SNP ID:
sf1220534308(Gbrowse)
Chromosome: chr12 Position: 20534308 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1375 | 62.25% | 37.75% |
| All Indica | 780 | 90.51% | 9.49% |
| All Japonica | 477 | 11.53% | 88.47% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 367 | 93.46% | 6.54% |
| Indica II | 207 | 87.44% | 12.56% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 331 | 4.83% | 95.17% |
| Tropical Japonica | 81 | 39.51% | 60.49% |
| Japonica Intermediate | 65 | 10.77% | 89.23% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220534308 | C->T | INTERGENIC | None |