Detailed information of SNP:
|
SNP ID:
sf1220697198(Gbrowse)
Chromosome: chr12 Position: 20697198 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 73.07% | 26.93% |
| All Indica | 797 | 73.65% | 26.35% |
| All Japonica | 496 | 79.84% | 20.16% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 374 | 56.42% | 43.58% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 25.81% | 74.19% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220697198 | T->C | LOC_Os12g34200(LOC_Os12g34200.1) | INTRON |