Detailed information of SNP:
|
SNP ID:
sf1220719080(Gbrowse)
Chromosome: chr12 Position: 20719080 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.98% | 35.02% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 497 | 19.72% | 80.28% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220719080 | T->C | INTERGENIC | None |