Detailed information of SNP:
|
SNP ID:
sf1220740402(Gbrowse)
Chromosome: chr12 Position: 20740402 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 81.79% | 18.21% |
| All Indica | 798 | 81.08% | 18.92% |
| All Japonica | 496 | 83.06% | 16.94% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 62.03% | 37.97% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220740402 | G->A | INTERGENIC | None |