Detailed information of SNP:
|
SNP ID:
sf1220741973(Gbrowse)
Chromosome: chr12 Position: 20741973 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 71.45% | 28.55% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 23.14% | 76.86% |
| Aus | 59 | 94.92% | 5.08% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220741973 | T->C | LOC_Os12g34270(LOC_Os12g34270.1) | Synonymous |