Detailed information of SNP:
|
SNP ID:
sf1220760413(Gbrowse)
Chromosome: chr12 Position: 20760413 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 58.02% | 41.98% |
| All Indica | 796 | 43.47% | 56.53% |
| All Japonica | 497 | 77.67% | 22.33% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 37.17% | 62.83% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 210 | 34.76% | 65.24% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220760413 | C->A | INTERGENIC | None |