Detailed information of SNP:
|
SNP ID:
sf1220794272(Gbrowse)
Chromosome: chr12 Position: 20794272 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 90.26% | 9.74% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 496 | 74.19% | 25.81% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 71.64% | 28.36% |
| Tropical Japonica | 93 | 83.87% | 16.13% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220794272 | G->A | INTERGENIC | None |