Detailed information of SNP:
|
SNP ID:
sf1220810599(Gbrowse)
Chromosome: chr12 Position: 20810599 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 68.57% | 31.43% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 22.94% | 77.06% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220810599 | A->C | INTERGENIC | None |