Detailed information of SNP:
|
SNP ID:
sf1220820145(Gbrowse)
Chromosome: chr12 Position: 20820145 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1357 | 85.48% | 14.52% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 441 | 57.60% | 42.40% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 285 | 38.60% | 61.40% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 62 | 82.26% | 17.74% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220820145 | A->G | LOC_Os12g34410(LOC_Os12g34410.1) | INTRON |