Detailed information of SNP:
|
SNP ID:
sf1220831637(Gbrowse)
Chromosome: chr12 Position: 20831637 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.39% | 35.61% |
| All Indica | 798 | 89.22% | 10.78% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 83.47% | 16.53% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220831637 | G->A | INTERGENIC | None |