Detailed information of SNP:
|
SNP ID:
sf1220833027(Gbrowse)
Chromosome: chr12 Position: 20833027 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.07% | 20.93% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 46.88% | 53.12% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 31.64% | 68.36% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220833027 | A->G | INTERGENIC | None |