Detailed information of SNP:
|
SNP ID:
sf1220841689(Gbrowse)
Chromosome: chr12 Position: 20841689 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 66.22% | 33.78% |
| All Indica | 796 | 97.49% | 2.51% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 7.16% | 92.84% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220841689 | C->T | INTERGENIC | None |