Detailed information of SNP:
|
SNP ID:
sf1220842059(Gbrowse)
Chromosome: chr12 Position: 20842059 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.37% | 37.63% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 497 | 20.72% | 79.28% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220842059 | C->A | INTERGENIC | None |