Detailed information of SNP:
|
SNP ID:
sf1220873998(Gbrowse)
Chromosome: chr12 Position: 20873998 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 52.40% | 47.60% |
| All Indica | 798 | 32.33% | 67.67% |
| All Japonica | 497 | 80.08% | 19.92% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 5.60% | 94.40% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 210 | 36.19% | 63.81% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220873998 | C->A | INTERGENIC | None |