Detailed information of SNP:
|
SNP ID:
sf1220875426(Gbrowse)
Chromosome: chr12 Position: 20875426 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.43% | 22.57% |
| All Indica | 798 | 68.42% | 31.58% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 25.47% | 74.53% |
| Indica Intermediate | 211 | 63.98% | 36.02% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220875426 | G->A | INTERGENIC | None |