Detailed information of SNP:



SNP ID: sf1220875426(Gbrowse)

Chromosome: chr12

Position: 20875426
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 77.43% 22.57%
All Indica798 68.42% 31.58%
All Japonica497 98.99% 1.01%
Aus67 28.36% 71.64%
Indica I375 95.20% 4.80%
Indica II212 25.47% 74.53%
Indica Intermediate211 63.98% 36.02%
Temperate Japonica335 98.81% 1.19%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 64.29% 35.71%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1220875426 G->A INTERGENIC None