Detailed information of SNP:
|
SNP ID:
sf1220880703(Gbrowse)
Chromosome: chr12 Position: 20880703 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 62.86% | 37.14% |
| All Indica | 778 | 48.97% | 51.03% |
| All Japonica | 494 | 90.69% | 9.31% |
| Aus | 65 | 24.62% | 75.38% |
| Indica I | 362 | 70.17% | 29.83% |
| Indica II | 212 | 18.40% | 81.60% |
| Indica Intermediate | 204 | 43.14% | 56.86% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 92 | 66.30% | 33.70% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220880703 | A->G | INTERGENIC | None |