Detailed information of SNP:
|
SNP ID:
sf1220882703(Gbrowse)
Chromosome: chr12 Position: 20882703 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 58.91% | 41.09% |
| All Indica | 797 | 43.54% | 56.46% |
| All Japonica | 495 | 80.00% | 20.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 22.19% | 77.81% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 47.62% | 52.38% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 92 | 17.39% | 82.61% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220882703 | C->A | INTERGENIC | None |