Detailed information of SNP:
|
SNP ID:
sf1220886258(Gbrowse)
Chromosome: chr12 Position: 20886258 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 71.24% | 28.76% |
| All Indica | 797 | 58.09% | 41.91% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 209 | 54.07% | 45.93% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220886258 | C->T | INTERGENIC | None |