Detailed information of SNP:
|
SNP ID:
sf1220919326(Gbrowse)
Chromosome: chr12 Position: 20919326 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 57.10% | 42.90% |
| All Indica | 797 | 40.65% | 59.35% |
| All Japonica | 495 | 79.60% | 20.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 27.54% | 72.46% |
| Indica II | 212 | 56.60% | 43.40% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 93 | 16.13% | 83.87% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220919326 | G->C | INTERGENIC | None |