Detailed information of SNP:
|
SNP ID:
sf1220969827(Gbrowse)
Chromosome: chr12 Position: 20969827 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 78.25% | 21.75% |
| All Indica | 783 | 97.32% | 2.68% |
| All Japonica | 496 | 45.56% | 54.44% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 370 | 98.65% | 1.35% |
| Indica II | 207 | 95.65% | 4.35% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 334 | 31.14% | 68.86% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220969827 | G->A | INTERGENIC | None |