Detailed information of SNP:
|
SNP ID:
sf1220981159(Gbrowse)
Chromosome: chr12 Position: 20981159 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1315 | 97.11% | 2.89% |
| All Indica | 715 | 94.83% | 5.17% |
| All Japonica | 485 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 338 | 94.38% | 5.62% |
| Indica II | 180 | 97.78% | 2.22% |
| Indica Intermediate | 197 | 92.89% | 7.11% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 83 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220981159 | G->T | INTERGENIC | None |