Detailed information of SNP:
|
SNP ID:
sf1220998278(Gbrowse)
Chromosome: chr12 Position: 20998278 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 67.38% | 32.62% |
| All Indica | 792 | 95.71% | 4.29% |
| All Japonica | 496 | 19.35% | 80.65% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220998278 | A->T | LOC_Os12g34650(LOC_Os12g34650.1) | SNPs that introduce stop codons |