Detailed information of SNP:
SNP ID:
sf1220998854(Gbrowse)
Chromosome: chr12 Position: 20998854 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1367 | 96.05% | 3.95% |
All Indica | 758 | 93.93% | 6.07% |
All Japonica | 496 | 100.00% | 0.00% |
Aus | 60 | 88.33% | 11.67% |
Indica I | 368 | 95.38% | 4.62% |
Indica II | 193 | 92.23% | 7.77% |
Indica Intermediate | 197 | 92.89% | 7.11% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 93 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1220998854 | A->G | LOC_Os12g34650(LOC_Os12g34650.1) | Synonymous |