Detailed information of SNP:
|
SNP ID:
sf1220998854(Gbrowse)
Chromosome: chr12 Position: 20998854 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1367 | 96.05% | 3.95% |
| All Indica | 758 | 93.93% | 6.07% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 60 | 88.33% | 11.67% |
| Indica I | 368 | 95.38% | 4.62% |
| Indica II | 193 | 92.23% | 7.77% |
| Indica Intermediate | 197 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220998854 | A->G | LOC_Os12g34650(LOC_Os12g34650.1) | Synonymous |