Detailed information of SNP:
|
SNP ID:
sf1221002243(Gbrowse)
Chromosome: chr12 Position: 21002243 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 63.30% | 36.70% |
| All Indica | 780 | 91.79% | 8.21% |
| All Japonica | 497 | 18.71% | 81.29% |
| Aus | 63 | 58.73% | 41.27% |
| Indica I | 369 | 93.22% | 6.78% |
| Indica II | 208 | 89.90% | 10.10% |
| Indica Intermediate | 203 | 91.13% | 8.87% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221002243 | T->A | LOC_Os12g34650(LOC_Os12g34650.1) | INTRON |