Detailed information of SNP:
|
SNP ID:
sf1221017387(Gbrowse)
Chromosome: chr12 Position: 21017387 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 63.65% | 36.35% |
| All Indica | 785 | 92.61% | 7.39% |
| All Japonica | 497 | 16.90% | 83.10% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 369 | 93.77% | 6.23% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 204 | 90.20% | 9.80% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221017387 | T->C | INTERGENIC | None |