Detailed information of SNP:
|
SNP ID:
sf1221017390(Gbrowse)
Chromosome: chr12 Position: 21017390 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 64.20% | 35.80% |
| All Indica | 787 | 92.12% | 7.88% |
| All Japonica | 497 | 19.11% | 80.89% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 371 | 93.26% | 6.74% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 204 | 89.71% | 10.29% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221017390 | A->C | INTERGENIC | None |