Detailed information of SNP:
|
SNP ID:
sf1221020352(Gbrowse)
Chromosome: chr12 Position: 21020352 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 65.93% | 34.07% |
| All Indica | 788 | 94.29% | 5.71% |
| All Japonica | 497 | 19.11% | 80.89% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221020352 | C->T | INTERGENIC | None |