Detailed information of SNP:
|
SNP ID:
sf1221027144(Gbrowse)
Chromosome: chr12 Position: 21027144 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 59.30% | 40.70% |
| All Indica | 789 | 84.41% | 15.59% |
| All Japonica | 497 | 19.11% | 80.89% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 373 | 85.79% | 14.21% |
| Indica II | 208 | 84.62% | 15.38% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221027144 | G->A | INTERGENIC | None |