Detailed information of SNP:
|
SNP ID:
sf1221038631(Gbrowse)
Chromosome: chr12 Position: 21038631 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 59.60% | 40.40% |
| All Indica | 792 | 84.85% | 15.15% |
| All Japonica | 497 | 18.91% | 81.09% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 372 | 86.56% | 13.44% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 208 | 82.69% | 17.31% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221038631 | G->T | INTERGENIC | None |