Detailed information of SNP:
|
SNP ID:
sf1221048238(Gbrowse)
Chromosome: chr12 Position: 21048238 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 92.88% | 7.12% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 484 | 80.79% | 19.21% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 82.37% | 17.63% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 62 | 66.13% | 33.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221048238 | G->T | INTERGENIC | None |