Detailed information of SNP:
|
SNP ID:
sf1221049665(Gbrowse)
Chromosome: chr12 Position: 21049665 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 68.65% | 31.35% |
| All Indica | 793 | 96.97% | 3.03% |
| All Japonica | 497 | 19.52% | 80.48% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221049665 | G->A | LOC_Os12g34720(LOC_Os12g34720.1) | Non-Synonymous SNP |