Detailed information of SNP:
|
SNP ID:
sf1221051306(Gbrowse)
Chromosome: chr12 Position: 21051306 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1372 | 75.80% | 24.20% |
| All Indica | 762 | 95.28% | 4.72% |
| All Japonica | 497 | 43.66% | 56.34% |
| Aus | 60 | 86.67% | 13.33% |
| Indica I | 359 | 96.10% | 3.90% |
| Indica II | 205 | 93.66% | 6.34% |
| Indica Intermediate | 198 | 95.45% | 4.55% |
| Temperate Japonica | 335 | 23.28% | 76.72% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 79.49% | 20.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221051306 | C->T | LOC_Os12g34720(LOC_Os12g34720.1) | Synonymous |