Detailed information of SNP:
|
SNP ID:
sf1221053088(Gbrowse)
Chromosome: chr12 Position: 21053088 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 62.53% | 37.47% |
| All Indica | 771 | 90.66% | 9.34% |
| All Japonica | 496 | 18.35% | 81.65% |
| Aus | 57 | 56.14% | 43.86% |
| Indica I | 363 | 92.84% | 7.16% |
| Indica II | 208 | 90.87% | 9.13% |
| Indica Intermediate | 200 | 86.50% | 13.50% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221053088 | T->C | INTERGENIC | None |