Detailed information of SNP:
|
SNP ID:
sf1221055687(Gbrowse)
Chromosome: chr12 Position: 21055687 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 61.69% | 38.31% |
| All Indica | 772 | 88.08% | 11.92% |
| All Japonica | 496 | 19.15% | 80.85% |
| Aus | 63 | 65.08% | 34.92% |
| Indica I | 365 | 91.78% | 8.22% |
| Indica II | 206 | 86.89% | 13.11% |
| Indica Intermediate | 201 | 82.59% | 17.41% |
| Temperate Japonica | 334 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221055687 | C->G | LOC_Os12g34730(LOC_Os12g34730.1) | Non-Synonymous SNP |