Detailed information of SNP:
|
SNP ID:
sf1221062851(Gbrowse)
Chromosome: chr12 Position: 21062851 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1296 | 57.25% | 42.75% |
| All Indica | 706 | 84.28% | 15.72% |
| All Japonica | 493 | 17.85% | 82.15% |
| Aus | 45 | 55.56% | 44.44% |
| Indica I | 347 | 85.88% | 14.12% |
| Indica II | 179 | 81.56% | 18.44% |
| Indica Intermediate | 180 | 83.89% | 16.11% |
| Temperate Japonica | 333 | 2.40% | 97.60% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221062851 | G->A | LOC_Os12g34740(LOC_Os12g34740.1) | Synonymous |