Detailed information of SNP:
|
SNP ID:
sf1221065033(Gbrowse)
Chromosome: chr12 Position: 21065033 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 68.09% | 31.91% |
| All Indica | 782 | 96.29% | 3.71% |
| All Japonica | 496 | 19.56% | 80.44% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 368 | 96.74% | 3.26% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221065033 | A->G | LOC_Os12g34750(LOC_Os12g34750.1) | Synonymous |