Detailed information of SNP:
|
SNP ID:
sf1221088118(Gbrowse)
Chromosome: chr12 Position: 21088118 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.63% | 49.37% |
| All Indica | 798 | 59.77% | 40.23% |
| All Japonica | 497 | 43.26% | 56.74% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 212 | 38.68% | 61.32% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 22.69% | 77.31% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221088118 | G->A | INTERGENIC | None |