Detailed information of SNP:
|
SNP ID:
sf1221089896(Gbrowse)
Chromosome: chr12 Position: 21089896 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 86.89% | 13.11% |
| All Indica | 738 | 81.71% | 18.29% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 62 | 48.39% | 51.61% |
| Indica I | 367 | 84.20% | 15.80% |
| Indica II | 169 | 71.60% | 28.40% |
| Indica Intermediate | 202 | 85.64% | 14.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221089896 | C->T | LOC_Os12g34790(LOC_Os12g34790.1) | Non-Synonymous SNP |