Detailed information of SNP:
|
SNP ID:
sf1221091357(Gbrowse)
Chromosome: chr12 Position: 21091357 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 69.45% | 30.55% |
| All Indica | 796 | 82.54% | 17.46% |
| All Japonica | 497 | 44.06% | 55.94% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 211 | 57.35% | 42.65% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 23.58% | 76.42% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221091357 | A->G | INTERGENIC | None |