Detailed information of SNP:
|
SNP ID:
sf1221109138(Gbrowse)
Chromosome: chr12 Position: 21109138 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 98.15% | 1.85% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 492 | 96.34% | 3.66% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 332 | 96.69% | 3.31% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 8 | 75.00% | 25.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221109138 | G->A | INTERGENIC | None |