Detailed information of SNP:
|
SNP ID:
sf1221121116(Gbrowse)
Chromosome: chr12 Position: 21121116 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 86.65% | 13.35% |
| All Indica | 797 | 83.94% | 16.06% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 19.70% | 80.30% |
| Indica I | 373 | 81.23% | 18.77% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221121116 | A->G | INTERGENIC | None |