Detailed information of SNP:
|
SNP ID:
sf1221134093(Gbrowse)
Chromosome: chr12 Position: 21134093 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1304 | 95.25% | 4.75% |
| All Indica | 750 | 99.73% | 0.27% |
| All Japonica | 434 | 89.17% | 10.83% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 351 | 100.00% | 0.00% |
| Indica II | 208 | 99.04% | 0.96% |
| Indica Intermediate | 191 | 100.00% | 0.00% |
| Temperate Japonica | 293 | 99.66% | 0.34% |
| Tropical Japonica | 83 | 62.65% | 37.35% |
| Japonica Intermediate | 58 | 74.14% | 25.86% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221134093 | T->G | INTERGENIC | None |