Detailed information of SNP:
|
SNP ID:
sf1221143019(Gbrowse)
Chromosome: chr12 Position: 21143019 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1313 | 96.27% | 3.73% |
| All Indica | 746 | 99.73% | 0.27% |
| All Japonica | 448 | 92.41% | 7.59% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 340 | 100.00% | 0.00% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 197 | 100.00% | 0.00% |
| Temperate Japonica | 301 | 99.67% | 0.33% |
| Tropical Japonica | 83 | 69.88% | 30.12% |
| Japonica Intermediate | 64 | 87.50% | 12.50% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221143019 | T->C | INTERGENIC | None |