Detailed information of SNP:
|
SNP ID:
sf1221264435(Gbrowse)
Chromosome: chr12 Position: 21264435 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 67.21% | 32.79% |
| All Indica | 798 | 61.53% | 38.47% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 374 | 60.43% | 39.57% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 84.78% | 15.22% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221264435 | G->A | INTERGENIC | None |