Detailed information of SNP:
|
SNP ID:
sf1221368535(Gbrowse)
Chromosome: chr12 Position: 21368535 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 96.02% | 3.98% |
| All Indica | 789 | 93.66% | 6.34% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 371 | 91.11% | 8.89% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221368535 | T->A | INTERGENIC | None |