Detailed information of SNP:
|
SNP ID:
sf1221396152(Gbrowse)
Chromosome: chr12 Position: 21396152 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 77.67% | 22.33% |
| All Indica | 797 | 81.43% | 18.57% |
| All Japonica | 497 | 80.89% | 19.11% |
| Aus | 65 | 27.69% | 72.31% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 211 | 83.89% | 16.11% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 82.09% | 17.91% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221396152 | A->G | INTERGENIC | None |