Detailed information of SNP:
|
SNP ID:
sf1221435230(Gbrowse)
Chromosome: chr12 Position: 21435230 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 90.50% | 9.50% |
| All Indica | 791 | 87.61% | 12.39% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 373 | 80.16% | 19.84% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 205 | 90.24% | 9.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1221435230 | C->G | INTERGENIC | None |